A fluorescent chemodosimeter based on rhodamine derivative for detection of Hg(II) ions studied by using the density functional theory - Phan Tu Quy

The fluorescent chemodosimeter RT based on rhodamine derivative for detection of mercury ions was studied, including the synthesis process, characteristics and applications. The optimized geometry and the electron properties of RT and RG were identified at the B3LYP/LanL2DZ level of theory with a combination of AIM and NBO analysis. The obtained results showed that the presence of spirolactam ring in RT led to break the π-bond conjugated system of rhodamine fluorophore at C10 atom, causing the fluorescence quenching of RT. Meanwhile, the formation of guanidine ring and spirolactam ring-opening in RG restored the π-bond conjugated system of rhodamine fluorophore, leading to the strong fluorescence in RG. As a result, RT could be used as an OFF-ON fluorescent chemodosimeter for detection of Hg(II) ions

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Vietnam Journal of Chemistry, International Edition, 55(2): 139-147, 2017 DOI: 10.15625/2525-2321.2017-00433 139 A fluorescent chemodosimeter based on rhodamine derivative for detection of Hg(II) ions studied by using the density functional theory Phan Tu Quy 1,2 , Nguyen Khoa Hien 3 , Truong Quy Tung 4 , Duong Tuan Quang 5* 1 Department of Chemistry - Hue University of Sciences - Hue University, Hue City, 84-54, Vietnam 2 Tay Nguyen University, Buon Ma Thuot City, 84-50, Vietnam 3 Mientrung Institute for Scientific Research - Vietnam Academy of Science and Technology, Hue City, 84-54, Vietnam 4 Hue University, Hue City, 84-54, Vietnam 5 Department of Chemistry - Hue University of Education - Hue University, Hue City, 84-54, Vietnam Received 7 November 2016; Accepted for publication 11 April 2017 Abstract The synthesis, characteristics and applications of the rhodamine derivative-based fluorescent chemodosimeter RT for detection of mercury ions have been studied at the B3LYP/LanL2DZ level of theory. The calculated results confirmed the presence of spirolactam ring in RT molecule. The Hg(II) ions reacted with RT to form RG, accompanied by the formation of guanidine ring and the spirolactam ring-opening in RG, turning on the fluorescence of RG. These results were in a good agreement with experimental investigations. It indicated that the quantum chemical calculations could be used well for the design, synthesis of the fluorescent chemodosimeter. Keywords. Fluorescence, chemodosimeter, rhodamine, mercury, DTF, TD-DFT. 1. INTRODUCTION The fluorescent sensors (chemodosimeter and chemosensor) are molecular sensors based on the transforms of fluorescence signal resulting in the interaction of the analytes with sensors. The first chemodosimeter based on spirolactam ring-opening process of rhodamine B derivative for the detection of Cu(II) ions was reported by Czarnik (1992) [1]. The publications of new fluorescent sensors have rapidly increased since 2005. Nowadays, new fluorescent sensors have been reported almost every week in the world [2]. This is due to the fact that the fluorescent sensors are often sensitive to the analytes, easy to carry out, and less expensive [3]. The fluorescent sensors are studied and applied for detecting many different objects, especially heavy metal ions. A great number of fluorescent sensors have recently been reported and can be used to selectively detect many different heavy metals ions, such as Hg(II), Cu(II), Fe(II), Fe(III), and Al(III) [4-8]. Many fluorescent sensors can detect metal ions in living cells like Fe(III) in Hepatic cells, Cu(II) in HepG2 cells [4], Hg(II) in PC3 cells [7], etc. However, the development of new fluorescent sensors for detection of trace heavy metal ions in various objects is currently receiving considerable attention due to their increasingly serious pollution. Scientists still continue to develop new fluorescent sensors to improve the detection limit, the selectivity, the solubility, the pH working range, the excitation and emission wavelength, etc [9-13]. The reported fluorescent sensors for the detection of heavy metal ions, biothiols and other analytes are studied mainly by experimental methods (including the design, synthesis, and application) and based on the researcher's experience [14, 15]. Currently, quantum chemical calculation can predict or explain many important properties of chemical systems [16, 17]. Using the quantum chemical calculation to study the synthesis and applications of fluorescent sensors is very useful, helping us to understand the nature of processes to provide a basis for research and development of new sensors. In this work, following the previously reported experimental studies [12], the synthesis process, characteristics and applications of a fluorescent chemodosimeter based on a rhodamine derivative for detection of Hg(II) ions were studied VJC, 55(2), 2017 Duong Tuan Quang et al. 140 at the B3LYP/LanL2DZ level of theory with a combination of AIM and NBO analysis. 2. MATERIALS AND METHODS 2.1. Instruments 1 H NMR spectra were obtained on Bruker-400 instrument (400 MHz); mass spectra were acquired on Finnigan 4021C MS-spectrometer; elemental analysis was carried out on Flash EA 1112 instrument; UV-Vis spectra and fluorescence spectra were performed on Shimadzu UV-1800 UV-Vis spectrophotometer and Shimadzu RF-5301 PC series fluorescence spectrometer, respectively. 2.2. Reagents 4-nitrophenyl isothiocyanate, rhodamine 6G, ethylenediamine, and all cations (Zn 2+ , Cu 2+ , Cd 2+ , Pb 2+ , Ag + , Fe 2+ , Cr 3+ , Co 3+ , Ni 2+ , Ca 2+ , Mg 2+ , K + and Na + ) were obtained from Aldrich. Acetonitrile, ethanol, and all other solvents were HPLC-grade reagents without fluorescent impurity. 2.3. Computational methods Geometry optimization and single point energy calculations of molecules were carried out using density functional theory (DFT) with the Gaussian 09 program. The B3LYP density function was applied using the LanL2DZ basis set [17-19]. The variation of enthalpy (ΔH298) and variation of Gibbs free energy (ΔG298) of reactions (at 1.0 atmosphere and 298K) are calculated based on the difference between the total energy of the reaction products and the total energy of the reactants, with the following equations [19]: H298 = (0 +Hcorr)products - (0 +Hcorr)reactants H298 = (0 +Gcorr)products - (0 +Gcorr)reactants Where 0 is total energies of the molecule, Hcorr and Gcorr are the thermal correction to enthalpy and the thermal correction to Gibbs free energy. The excited state and time-dependent factors were investigated using time-dependent density functional theory (TD-DFT) at the same level of theory [11]. Topological properties of electron density were probed using the AIM 2000 software for the atom-in-molecule (AIM) theory. The characteristics of each bond critical point (BCP) and bond ring critical point (RCP) considered in this study included the electron density (ρ(r)), its Laplacian (2(ρ(r)) [11, 20-21]. Those theoretical calculations were carried out on a supercomputer operating system with a 32-cores processor and 72- gigabytes memory at the laboratory of computational chemistry and modelling of Quy Nhon University. 3. RESULTS AND DISCUSSION 3.1. The survey on the calculation method To use the B3LYP/LanL2DZ level of theory for research compounds, a comparison between the calculated results and the experimental structure of rhodamine (fluorophore) has been carried out. The optimized geometry of rhodamine with the numbering scheme of the atoms is shown in Fig. 1. The calculated and experimental bond lengths in rhodamine were listed in table 1. Table 1: The calculated and experimental bond lengths in rhodamine (Å) Bond lengths Exp [23] B3LYP C1-C2 1.442 1.419 C1-C6 1.341 1.390 C1-C21 1.502 1.510 C2-C3 1.409 1.401 C2-N22 1.325 1.408 C3-C4 1.361 1.387 C4-C5 1.419 1.406 C4-O7 1.368 1.363 C5-C6 1.430 1.407 C5-C10 1.388 1.448 C10-C15 1.491 1.495 C15-C16 1.400 1.412 C15-C20 1.381 1.402 C16-C17 1.392 1.402 C16-C29 1.475 1.501 C17-C18 1.361 1.388 C18-C19 1.370 1.393 C19-C20 1.373 1.392 N22-C27 1.455 1.473 C27-C28 1.493 1.523 C29-O30 1.193 1.212 C29-O31 1.333 1.342 O31-C33 1.462 1.453 C32-C33 1.470 1.519 VJC, 55(2), 2017 A fluorescent chemodosimeter based on 141 Figure 1: The optimized geometry of rhodamine at the B3LYP/LanL2DZ level of theory The paired t-test method in the statistical test was used for comparison between the calculated values and experimental values [23]. For the bond length, the calculated value of |t| of 0.54 is less than the critical value of |t| of 2.07 (f = n-1 = 23 degrees of freedom, P = 0.05). These results indicate that the difference between the calculated and experimental values is insignificant. Therefore, the selected level of theory is possible to apply to the research system with reliable results. 3.2. The synthesis and characterization of sensor The sensor RT (rhodamine-ethylenediamine- nitrothiourea conjugate) was synthesized via two reactions. The synthetic procedure of the RT is shown in figure 2. The calculated enthalpies (∆H298) and free energies (∆G298) of reactions at the B3LYP/LanL2DZ level are summarized in table 2. The obtained results indicate that the enthalpies and free energy of these reactions are quite negative. This indicates that the reactions (1) and (2) are energetically favorable. Figure 2: Synthetic procedure of the RT Table 2: The calculation results of enthalpies and free energies of reactions at the B3LYP/LanL2DZ level (kcal.mol -1 ) Reaction ∆H298 ∆G298 (1) -757.9 -765.1 (2) -25.1 -6.3 The synthesis of RT was studied and presented in our previous publication [12]. Accordingly, the chemodosimeter RT was synthesized from the reaction of the rhodamine 6G and ethylenediamine, followed by the reaction with 4-nitrophenyl isothiocyanate in ca. 39.5 % overall yield. The structures of intermediate and final products were confirmed by 1 H NMR and mass spectra. The structure of RT was obtained as shown in figure 2. The optimized geometry of RT with the numbering scheme of the atoms is identified at the B3LYP/LanL2DZ level of theory and is shown in figure 3. The theoretical structural parameters such as bond lengths, bond angles and dihedral angles of RT are shown in table 3. The obtained results show that the majority of the atoms in the RT molecule is distributed on two perpendicular planes. The C2– C12–N19–C25 dihedral angle in RT is 85.20. One of them contains the C1, C2, C3, C4, C5, C6, N7, C8, C9, C10, C11, C12, C13, C14, C15, N16, N17, and C18 atom. The other one contains the N19, C20, C21, C22, C23, C24, C25 and C26 atoms. Figure 3: The optimized geometry of RT with the numbering scheme of the atoms at the B3LYP/LanL2DZ level of theory The C5–C9–N19–C22 dihedral angle in RT is 73.1 0 . The C5–C10–C9, C5–C10–C22, C9–C10– N19, C9–C10–C22 angles are 110.20, 112.20, 110.60, 112.0 0 , respectively. The C5–C10–C9, C5–C10– C22, C9–C10–N19, C9–C10–C22 angles are 110.20, 112.2 0 , 110.6 0 , 112.0 0 , respectively. The C5–C10, C9–C10, C22–C10 bond lengths are 1.522 Å, 1.525 VJC, 55(2), 2017 Duong Tuan Quang et al. 142 Å, 1.530 Å, nearly the same as the C–C single bond (1.5 Å). The C10–N19 bond length is 1.496 Å, nearly the same as the C–N single bond (1.5 Å). The results show that the C10 atom acquires sp 3 hybrid state. The N19, N34, N36, N44 atoms acquire sp 3 hybrid state, but the N19–C10–C20–C32, N34– C33–C35–H77, N36–C35–C37–H78, N44–C40– O45–O46 dihedral angles are 3.60, 6.80, 6.30, 0.10, respectively, different from the N-H-H-H dihedral angle of 35 0 in NH3. The structure of RT was again confirmed by the results obtained from AIM analysis. The calculated values of (r) and 2(ρ(r)) at the BCPs of RT are listed in table 4. The topological properties of the BCPs are summarized in Fig. 4a. The results obtained from AIM analysis also indicate the presence of the BCPs in each of the intermolecular contacts in RT, especially at the new bonds formed. A RCP is found in the central area of the C10, N19, C20, C21 and C22 atom, indicating the presence of spirolactam ring in RT. The molecular structure of RT obtained from the theoretical investigations agrees well with experimental results as shown in figure 2. Figure 4: The topological properties of RT (a) and RG (b), at the Bond Critical Points (BCPs) and Ring Critical Point (RCPs): Bond Critical Points (BCPs) denoted by red color, Ring Critical Points (RCPs) denoted by yellow color Table 3: The structural parameters of RT, bond lengths in angstrom, angles in degrees Bond lengths B3LYP Bond angles B3LYP Dihedral angles B3LYP C1–C2 1.425 C1–C2–C3 118.9 C1–C2–C3–C4 -0.1 C2–C3 1.396 C4–O7–C8 118.9 C3–C4–O7–C8 179.9 C4–N7 1.373 C5–C10–C9 110.2 C5–C10–C9–C14 -178.6 N7–C8 1.370 C9–C10–N19 110.6 O7–C8–C11–C12 -179.7 C8–C9 1.392 C5–C10–C22 112.2 C4–C5–C10–N19 121.3 C9–C10 1.525 C22–C10–N19 100.1 C9–C10–C22–C26 -63.8 C5–C10 1.522 C10–N19–C20 114.3 C9–C10–N19–C20 -116.5 C8–C11 1.395 N19–C20–O27 125.4 C10–N19–C20–C21 -1.8 C10–N19 1.496 C21–C20–O27 128.5 C10–N19–C20–O27 178.1 C10–C22 1.530 C22–C21–C23 121.8 O27–C20–N19–C32 3.8 C20–N19 1.373 C20–N19–C32 121.3 C20–N19–C32–C33 -78.0 C20–C21 1.486 N19–C32–C33 112.1 N19–C32–C33–N34 167.0 C21–C22 1.390 C32–C33–N34 112.3 C32–C33–N34–C35 87.5 C20–O27 1.224 C33–N34–C35 125.6 C33–N34–C35–N36 176.1 N19–C32 1.451 N34–C35–N36 111.4 C33–N34–C35–S43 -1.5 C32–C33 1.541 N34–C35–S43 123.5 N34–C35–N36–C37 170.0 C33–C34 1.458 S43–C35–N36 125.1 C35–N36–C37–C38 154.2 N34–C35 1.360 C35–N36–C37 130.8 C37–C38–C39–C40 0.3 C35–S43 1.670 C37–C38–C39 121.0 C39–C40–N44–O45 -179.3 C35–N36 1.391 C40–N44–O45 117.8 C39–C40–N44–O46 0.7 VJC, 55(2), 2017 A fluorescent chemodosimeter based on 143 Bond lengths B3LYP Bond angles B3LYP Dihedral angles B3LYP N36–C37 1.401 C40–N44–O46 117.8 C4–C3–C2–N16 -178.4 C37–C38 1.406 O45–N44–O46 124.4 C8–C11–C12–N17 177.0 C40–N44 1.468 C2–N16–C30–C31 -175.8 N44–O45 1.227 C12–N17–C28–C29 179.4 N44–O46 1.228 Table 4: Electron density (ρ(r), in au) and the Laplacian (2(ρ(r)), in au) of RT and RG at the B3LYP/LanL2DZ level of theory 3.3. The application of sensor The previously published experimental results indicated that RT could be used as a fluorescent chemodosimeter for selective detection of Hg(II) ions in water media in the presence of the competing metal ions. The addition of Hg(II) ions to the aqueous solution of the chemodosimeter RT caused an irreversible fluorescence OFF-ON response with a remarkable visual color change from colorless to pink. The experimental results suggested that the addition of Hg(II) induced a desulfurization reaction and cyclic guanylation of thiourea moiety followed by the ring-opening of rhodamine spirolactam in RT, finally, a new rearrangement product RG was formed as shown in figure 5. This led to the change in fluorescence signal [12]. Figure 5: The proposed mechanism of the reaction between RT and Hg(II) ions To shed light on the cause of the fluorescence signal changes in the reaction between Hg(II) ions and RT to form RG, the theoretical investigation on the optimized geometry of the ground state, excited states, AIM and NBD analysis have been conducted for both RT and RG. The optimized geometry of RG (with the numbering scheme of the atoms) is identified at the B3LYP/LanL2DZ level of theory and is shown in figure 6. The calculated values of (r) and 2(ρ(r)) at the BCPs of RG are listed in table 3. The topological properties of the BCPs are summarized in figure 4b. The results obtained from AIM analysis confirms the presence of bonds through the presence of the BCPs in each of the intermolecular contacts in RG, especially at the new bonds formed or the new Figure 6: The optimized geometry of RG with the numbering scheme of the atoms at the B3LYP/LanL2DZ level of theory Compound Bond (r) 1 2 3  2 ((r)) Critical Point RT N34C35 0.300 4.544 -1.278 -3.239 0.249 BCP C10N19C20C21C22 0.042 -5.676 -0.178 -3.566 0.163 RCP RG N22C23 0.272 -1.019 -1.188 -3.153 0.249 BCP N22C23N24C25C26 0.045 0.133 -1.029 -4.565 0.163 RCP VJC, 55(2), 2017 Duong Tuan Quang et al. 144 bonds cleaved. The results obtained from AIM analysis show the presence of a RCP in the central area of the N22, C23, N24, C25, and C26 atom. There is not any RCP in the central area of the C10, C15, C16, C21, N22 and O27 atom in RG, suggesting the presence of guanidine ring, and the absence of spirolactam ring in RG. These theoretical investigations agree well with experimental results as shown in figure 5. The UV-Vis spectra, the electronic and fluorescent properties of RT and RG were calculated using the TD-DFT method at the same level optimized structure. Fig. 7 shows that RT exhibits a characteristic absorption band at 543.6 nm with a insignificant oscillation strength of 0.0003. Meanwhile, RG exhibits a characteristic absorption band at 476.5 nm with strong oscillation strength of 0.5727. These calculated results are quite similar to the experimental investigations. Figure 7: The UV-Vis spectra of RT (a) and RG (b) at the B3LYP/LanL2DZ level of theory The UV-Vis experimental spectra of RT (c) and RG (d). Table 5: Calculated excitation energy (E), wavelength (λ), and oscillator strength (f) for low-laying singlet state of RT and RG Compound Main orbital transition TD-DFT/B3LYP/LanL2DZ CIC a E(eV) (nm) f RT S0 S1 163  164 0.7065 2.13 581.79 0.0003 S0 →S2 162  164 0.7064 2.28 548.63 0.0003 S0 →S3 160  164 0.6106 2.52 492.60 0.0002 RG S0 S1 159  160 0.7060 1.79 691.58 0.0009 S0 →S2 155  161 0.1255 2.60 476.55 0.5727 159  161 0.5797 S0 →S3 159  162 0.7018 2.69 460.23 0.0102 aCI expansion coefficients for the main orbital transitions. (a) (b) 450 500 550 600 650 0,0 0,1 0,2 0,3 0,4 A b so rb a n ce Wavelength (nm) 450 500 550 600 650 0,0 0,1 0,2 0,3 0,4 A b so rb a n ce Wavelength (nm) (c) (d) VJC, 55(2), 2017 A fluorescent chemodosimeter based on 145 The main orbital transitions were calculated using TD-DFT at the B3LYP/LanL2DZ level of theory and presented in table 5, Figs. 8 and 9. The oscillator strength of all singlet electronic transition of RT is insignificant, f < 0.01, indicating that RT is not a fluorescent compound [24]. The singlet electronic transition of RG is mainly contributed by the S0→S2 transitions with the strongest oscillation strength of 0.5727, and is composed of the transitions from MO-155→MO-161 and MO- 159→MO-161. The transition from MO-155 to MO- 161 does not cause the fluorescence. This is due to the fact that MO-155 belongs to receptor, but MO- 161 belongs to fluorophore (Fig. 8), therefore the space distance between them is large, preventing the fluorescence. It is similar to the Förster Resonance Energy Transfer (FRET) - based sensors [25]. The transition from MO-159 to MO-161 is an important transition to cause the fluorescence in RG. Here, the PET process from receptor to fluorophore does not occur in RG because there is not any MO belonging to the receptor with energy level between MO-159 and MO-161 (Fig. 9). NBO analysis results in table 6 provide more thorough insight into the bond properties and intermolecular orbital interaction, and therefore make clearer the fluorescent properties of RT and RG. The results further confirm the presence of spirolactam ring in RT molecule. The π-bond conjugated system of rhodamine fluorophore is broken at C10 atom and this causes the fluorescence quenching of RT. Meanwhile, the formation of guanidine ring and spirolactam ring-opening in RG restore the π-bond conjugated system of rhodamine fluorophore, causing the strong fluorescence in RG. Figure 9: Frontier orbital energy diagram of free fluorophore, receptor and chemosimeter RT and RG (The energy levels are relative, not in proportion) Figure 8: Molecular orbital plots of RT and RG at the B3LYP/LanL2DZ level. C, N, S, and H atoms denoted as gray, blue, yellow, and white atoms, respectively VJC, 55(2), 2017 Duong Tuan Quang et al. 146 Table 6: Significant second-order interaction energies (E (2) , in kcal mol -1 ) between donor and acceptor orbitals in RT and RG (at the B3LYP/LanL2DZ level of theory) Donor NBO (i) Acceptor NBO (j) E (2) Donor NBO (i) Acceptor NBO (j) E (2) RT RG π(C1–C6) π*(C2–C3) 21.22 π(C1–C6) π*(C2–C3) 20.68 π(C1–C6) π*(C4–C5) 16.53 π(C1–C6) π*(C4–C5) 16.45 π(C2–C3) π*(C1–C6) 15.84 π(C2–C3) π*(C1–C6) 16.67 π(C2–C3) π*(C4–C5) 26.99 π(C2–C3) π*(C4–C5) 28.09 π(C4–C5) π*(C1–C6) 21.63 π(C4–C5) π*(C1–C6) 22.26 π(C4–C5) π*(C2–C3) 14.91 π(C4–C5) π*(C2–C3) 18.04 π(C8–C9) π*(C11–C12) 16.63 π(C4–C5) π*(C9–C10) 17.75 π(C8–C9) π*(C13–C14) 21.57 π(C8–C11) π*(C9–C10) 16.20 π(C11–C12) π*(C8–C9) 25.78 π(C8–C11) π*(C12–C17) 17.79 π(C11–C12) π*(C13–C14) 16.72 π(C9–C10) π*(C4–C5) 13.65 π(C13–C14) π*(C8–C9) 18.03 π(C9–C10) π*(C8–C11) 17.79 π(C13–C14) π*(C11–C12) 22.24 π(C9–C10) π*(C13–C14) 15.54 π(C12–N17) π*(C8–C11) 12.39 π(C12–N17) π*(C13–C14) 10.65 π(C13–C14) π*(C9–C10) 17.95 π(C13–C14) π*(C12–N17) 17.69 4. CONCLUSION The fluorescent chemodosimeter RT based on rhodamine derivative for detection of mercury ions was studied, including the synthesis process, characteristics and applications. The optimized geometry and the electron properties of RT and RG were identified at the B3LYP/LanL2DZ level of theory with a combination of AIM and NBO analysis. The obtained results showed that the presence of spirolactam ring in RT led to break the π-bond conjugated system of rhodamine fluorophore at C10 atom, causing the fluorescence quenching of RT. Meanwhile, the formation of guanidine ring and spirolactam ring-opening in RG restored the π-bond conjugated system of rhodamine fluorophore, leading to the strong fluorescence in RG. As a result, RT could be used as an OFF-ON fluorescent chemodosimeter for detection of Hg(II) ions. Acknowledgment. This research was funded by the Vietnam National Foundation for Science and Technology Development (NAFOSTED) under grant number 104.04-2014.35 (DTQ). 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